PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 48763
Common NameMICPUCDRAFT_48763
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HSF
Protein Properties Length: 507aa    MW: 52842.4 Da    PI: 5.2254
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
48763genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.25.2e-28341242101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++++++d++ +++isws+ng++f v++++ ++++ Lp++FkhsnfaSFvRQLn YgF+k ++++          eF  + F++gk ell++++
         48763  34 FLWKTWNLVSDASSDHIISWSANGRTFTVWQPDLLETEHLPNTFKHSNFASFVRQLNNYGFRKCHSDR---------FEFGVEGFEQGKPELLTSLR 121
                   99***************************************************************999.........67****************99 PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+ 
         48763 122 RHD 124
                   975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3028117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-3830123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-2630122IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-153457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-2534122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-157284IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-158597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MSAATAAGSK GFSAQPGSAT GATTPFATVN VSPFLWKTWN LVSDASSDHI ISWSANGRTF  60
TVWQPDLLET EHLPNTFKHS NFASFVRQLN NYGFRKCHSD RFEFGVEGFE QGKPELLTSL  120
RRHDAPRNKK GGDAKGGGGK AAAGSASAAN ARGGGGAKKK NLMEGTPDHG AQSLEIGAYG  180
GITSEVEQLK RDRLLLLKEV MRLRDVQNNT TEEVRRLSAR LQATEQFQSQ MMSFVEAVQQ  240
QGGGANGLAG SFGNADEMIA RFGGSLGPRK AARKRRQMFL PSSSSGGGGG GSGGGGGGGV  300
AGAGVDATRS AIQEVQDEID EIDDALMTAQ AYGPLSPNPH AAIQLPENEG AWLDMLGGGD  360
DDDALVDGVD LTPASPPRVH VGGQRVRQSP LITSMSDVDL ALAAAASGGS GGNSPGETAV  420
DDADAADQAA ARRGERQRDP HPQPDAFVAN ILNRGPSLEK QLSLGFLDHM DSADIGEMVR  480
DMNIGVGSGG SDEFTRRVDA LSDVIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-183012216119Heat shock factor protein 1
5d5u_B4e-183012225128Heat shock factor protein 1
5d5v_B4e-183012225128Heat shock factor protein 1
5d5v_D4e-183012225128Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062948.10.0heat shock transcription factor
TrEMBLC1N5D30.0C1N5D3_MICPC; Heat shock transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-37heat shock transcription factor A1D
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]